AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 21, 2009 08:11AM
GAM doesn't take a duration parameter. That's what BLOCK is for: BLOCK(d) is basically GAM(4,1) integrated over a duration of 1 second. BLOCK5(d) is the same with GAM(5,1) instead -- delayed a little bit from BLOCK.

Try these commands to see what the BLOCK(1) response function looks like:

3dDeconvolve -num_stimts 1 -stim_times 1 '1D: 1' 'BLOCK(1)' -nodata 200 0.1 -polort -1
1dplot nodata.xmat.1D

To compare all 3 at once, try this:

Create file q.1D with the single line below

1*0.2 1.25*0.2 1.5*0.2 1.75*0.2 2.0*0.2

Then run the command below

3dDeconvolve -num_stimts 3 -stim_times 1 '1D: 1' 'BLOCK(1)' \
-stim_times 2 '1D: 1' 'BLOCK5(1)' \
-stim_times_AM1 3 q.1D GAM \
-nodata 200 0.1 -polort -1 -x1D stdout: | 1dplot -stdin -one -dx 0.1 -thick -thick

This will plot BLOCK(1), BLOCK5(1), and the sum of 5 GAMs spread evenly across a 1 second interval.

Then you pays your money and you takes your chances.
Subject Author Posted

3dDeconvolve - stim_times option

Srikanth February 23, 2009 05:48PM

Re: 3dDeconvolve - stim_times option

rick reynolds February 23, 2009 06:08PM

Re: 3dDeconvolve - stim_times option

Srikanth February 23, 2009 06:20PM

Re: 3dDeconvolve - stim_times option

rick reynolds February 23, 2009 07:13PM

Re: 3dDeconvolve - stim_times option

Srikanth September 19, 2009 04:48PM

Re: 3dDeconvolve - stim_times option

rick reynolds September 19, 2009 07:20PM

Re: 3dDeconvolve - stim_times option

Srikanth September 20, 2009 03:52PM

Re: 3dDeconvolve - stim_times option

bob cox September 21, 2009 08:11AM

Re: 3dDeconvolve - stim_times option

Srikanth September 21, 2009 09:47AM

Re: 3dDeconvolve - stim_times option

Srikanth December 17, 2009 06:37PM

Re: 3dDeconvolve - stim_times option

rick reynolds December 18, 2009 09:59AM

Re: 3dDeconvolve - stim_times option

Srikanth December 18, 2009 10:45AM

Re: 3dDeconvolve - stim_times option

Marc Ettlinger October 21, 2009 03:06PM