AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 07, 2009 02:51PM
Hello Gang,

Thank you very much. No, actually, I was talking about TRs. Maybe it helps to attach the commands I entered and the output.

Here is an example of the script

3dDeconvolve\
-input ../../Exam#5392/Results/timeseries+tlrc\
-mask ../../Exam#5392/Results/clippedAutomask.1+tlrc\
-censor ../../Exam#5392/Results/S1G1censor.txt\
-polort 2\
-num_stimts 10\
-stim_file 1 ../../Exam#5392/Results/fmrigroup1.txt[0]\
-stim_label 1 favhigh\
-stim_maxlag 1 5\
-stim_file 2 ../../Exam#5392/Results/fmrigroup1.txt[1]\
-stim_label 2 neuthigh\
-stim_maxlag 2 5\
-stim_file 3 ../../Exam#5392/Results/fmrigroup1.txt[2]\
-stim_label 3 lfhigh\
-stim_maxlag 3 5\
-stim_file 4 ../../Exam#5392/Results/fmrigroup1.txt[3]\
-stim_label 4 favlow\
-stim_maxlag 4 5\
-stim_file 5 ../../Exam#5392/Results/fmrigroup1.txt[4]\
-stim_label 5 neutlow\
-stim_maxlag 5 5\
-stim_file 6 ../../Exam#5392/Results/fmrigroup1.txt[5]\
-stim_label 6 lflow\
-stim_maxlag 6 5\
-stim_file 7 ../../Exam#5392/Results/mot[1]\
-stim_label 7 Roll\
-stim_maxlag 7 5\
-stim_file 8 ../../Exam#5392/Results/mot[5]\
-stim_label 8 RL\
-stim_maxlag 8 5\
-stim_file 9 SEED_ts_C1_5392.1D\
-stim_label 9 SEED\
-stim_maxlag 9 5\
-stim_file 10 Inter_ts_5392.1D\
-stim_label 10 InteractRegressor\
-stim_maxlag 10 5\
-fout\
-rout\
-tout\
-bucket deconTR1..5new\
-xsave\
-tshift

And this is the corresponding output:

-- At sub-brick #0 'Full_R^2' datum type is short: 0 to 32767 [internal]
[* 2.91721e-05] 0 to 0.955884 [scaled]
statcode = fibt; statpar = 30 162
-- At sub-brick #1 'Full_Fstat' datum type is short: 0 to 32767 [internal]
[* 0.00357079] 0 to 117.004 [scaled]
statcode = fift; statpar = 60 324
-- At sub-brick #2 'favhigh#0_Coef' datum type is short: -22770 to 32767 [internal]
[* 0.000966428] -22.0056 to 31.667 [scaled]
-- At sub-brick #3 'favhigh#0_Tstat' datum type is short: -31047 to 32767 [internal]
[* 0.000172245] -5.3477 to 5.64396 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #4 'favhigh#1_Coef' datum type is short: -26445 to 32767 [internal]
[* 0.00124714] -32.9807 to 40.8652 [scaled]
-- At sub-brick #5 'favhigh#1_Tstat' datum type is short: -32767 to 31043 [internal]
[* 0.00021243] -6.96071 to 6.59448 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #6 'favhigh#2_Coef' datum type is short: -32767 to 22415 [internal]
[* 0.00123485] -40.4622 to 27.679 [scaled]
-- At sub-brick #7 'favhigh#2_Tstat' datum type is short: -32767 to 23999 [internal]
[* 0.000237361] -7.7776 to 5.69642 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #8 'favhigh#3_Coef' datum type is short: -32767 to 18049 [internal]
[* 0.00138369] -45.3395 to 24.9743 [scaled]
-- At sub-brick #9 'favhigh#3_Tstat' datum type is short: -32767 to 30386 [internal]
[* 0.000209391] -6.86113 to 6.36257 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #10 'favhigh#4_Coef' datum type is short: -32767 to 16225 [internal]
[* 0.00119531] -39.1668 to 19.3939 [scaled]
-- At sub-brick #11 'favhigh#4_Tstat' datum type is short: -31791 to 32767 [internal]
[* 0.000171497] -5.45206 to 5.61944 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #12 'favhigh#5_Coef' datum type is short: -32767 to 20275 [internal]
[* 0.000586292] -19.211 to 11.8871 [scaled]
-- At sub-brick #13 'favhigh#5_Tstat' datum type is short: -32767 to 32092 [internal]
[* 0.000139507] -4.57122 to 4.47706 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #14 'favhigh_R^2' datum type is short: 0 to 32767 [internal]
[* 6.47917e-06] 0 to 0.212303 [scaled]
statcode = fibt; statpar = 3 162
-- At sub-brick #15 'favhigh_Fstat' datum type is short: 0 to 32767 [internal]
[* 0.000444175] 0 to 14.5543 [scaled]
statcode = fift; statpar = 6 324
-- At sub-brick #16 'neuthigh#0_Coef' datum type is short: -23922 to 32767 [internal]
[* 0.00119018] -28.4714 to 38.9985 [scaled]
...
...
...
-- At sub-brick #128 'InteractRegressor#0_Coef' datum type is short: -18192 to 32767 [internal]
[* 0.092031] -1674.23 to 3015.58 [scaled]
-- At sub-brick #129 'InteractRegressor#0_Tstat' datum type is short: -27305 to 32767 [internal]
[* 0.000156826] -4.28215 to 5.13873 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #130 'InteractRegressor#1_Coef' datum type is short: -32767 to 18865 [internal]
[* 0.108909] -3568.62 to 2054.57 [scaled]
-- At sub-brick #131 'InteractRegressor#1_Tstat' datum type is short: -32767 to 28108 [internal]
[* 0.00010048] -3.29242 to 2.82429 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #132 'InteractRegressor#2_Coef' datum type is short: -15101 to 32767 [internal]
[* 0.105381] -1591.36 to 3453.03 [scaled]
-- At sub-brick #133 'InteractRegressor#2_Tstat' datum type is short: -29085 to 32767 [internal]
[* 7.93471e-05] -2.30781 to 2.59997 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #134 'InteractRegressor#3_Coef' datum type is short: -32767 to 18976 [internal]
[* 0.0920878] -3017.44 to 1747.46 [scaled]
-- At sub-brick #135 'InteractRegressor#3_Tstat' datum type is short: -32767 to 29387 [internal]
[* 7.28285e-05] -2.38637 to 2.14021 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #136 'InteractRegressor#4_Coef' datum type is short: -22035 to 32767 [internal]
[* 0.0738417] -1627.1 to 2419.57 [scaled]
-- At sub-brick #137 'InteractRegressor#4_Tstat' datum type is short: -32767 to 32721 [internal]
[* 7.96606e-05] -2.61024 to 2.60657 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #138 'InteractRegressor#5_Coef' datum type is short: -32767 to 32252 [internal]
[* 0.0491403] -1610.18 to 1584.87 [scaled]
-- At sub-brick #139 'InteractRegressor#5_Tstat' datum type is short: -30218 to 32767 [internal]
[* 0.000123915] -3.74447 to 4.06033 [scaled]
statcode = fitt; statpar = 324
-- At sub-brick #140 'InteractRegressor_R^2' datum type is short: 0 to 32767 [internal]
[* 5.11835e-06] 0 to 0.167713 [scaled]
statcode = fibt; statpar = 3 162
-- At sub-brick #141 'InteractRegressor_Fstat' datum type is short: 0 to 32767 [internal]
[* 0.000332086] 0 to 10.8814 [scaled]


Best,
Jana

Subject Author Posted

context dependent analysis

Lesley Fidler April 06, 2009 11:12PM

Re: context dependent analysis

Jana April 07, 2009 02:08AM

Re: context dependent analysis

Gang Chen April 07, 2009 10:52AM

Re: context dependent analysis

Jana April 07, 2009 02:51PM

Re: context dependent analysis

Gang Chen April 07, 2009 05:49PM

Re: context dependent analysis

Jana April 08, 2009 03:39AM

Re: context dependent analysis

Gang Chen April 08, 2009 11:48AM

Re: context dependent analysis

Jana April 08, 2009 04:24PM

Re: context dependent analysis

Gang Chen April 09, 2009 11:35AM

Re: context dependent analysis

Jana April 09, 2009 04:35PM

Re: context dependent analysis

Gang Chen April 07, 2009 10:45AM

Re: context dependent analysis

Jana April 07, 2009 02:54PM

Re: context dependent analysis

Gang Chen April 07, 2009 05:39PM

Re: context dependent analysis

Jana April 08, 2009 03:40AM