AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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August 14, 2009 01:59PM
Hi,

I am pretty new to AFNI and I cannot figure out what is wrong with my script.

Here is the script I'm trying to run:

set names = ( 1056 1058 1059 1061 1064 1066 1067 )
set date = ( 081009 ) foreach name ($names)
cd $name
echo $name

3dDeconvolve -input tshift_reg_blur_flanker1081009+orig tshift_reg_blur_flanker2081009+orig tshift_reg_blur_flanker3081009+orig -nfirst 0 -polort 2 \
-num_stimts 3 -basis_normall 1 \
-stim_times 1 ../stim_times_congruent.1D 'GAM' \
-stim_label 1 congruent \
-stim_times 2 ../stim_times_incongruent.1D 'GAM \
-stim_label 2 incongruent \
-stim_times 3 ../stim_times_neutral.1D 'GAM' \
-stim_label 3 neutral \
-num_glt 2 \
-glt_label 1 con_inc_diff \
-gltsym 'SYM:+congruent -incongruent' \
-glt_label 2 con_inc_ave \
-gltsym 'SYM:+0.5*congruent +0.5incongruent' \
-CENSORTR *:0-15 \
-fitts fit_ts -errts error_ts \
-xjpeg glm_matrix.jpg -tout -fout -bucket glm_flanker_${date}

cd ../

end
exit

When I try to run this, I get the following message in the xterm window: Unmatched '.

Can anyone help me with this? Is there any other information I should post?

Thank you in advance!

-Tali
Subject Author Posted

3dDeconvolve problem

Tali August 14, 2009 01:59PM

Re: 3dDeconvolve problem

Aisling Whitaker August 14, 2009 02:11PM

Re: 3dDeconvolve problem

Tali August 15, 2009 05:17PM

Re: 3dDeconvolve problem

rick reynolds August 16, 2009 12:03PM

Re: 3dDeconvolve problem

Tali August 17, 2009 05:06PM

Re: 3dDeconvolve problem

rick reynolds August 17, 2009 05:52PM

Re: 3dDeconvolve problem

Tali August 17, 2009 07:31PM

Re: 3dDeconvolve problem

rick reynolds August 17, 2009 08:03PM

Re: 3dDeconvolve problem

Tali August 21, 2009 10:22AM