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August 14, 2009 01:59PM
Hi,

I am pretty new to AFNI and I cannot figure out what is wrong with my script.

Here is the script I'm trying to run:

set names = ( 1056 1058 1059 1061 1064 1066 1067 )
set date = ( 081009 ) foreach name ($names)
cd $name
echo $name

3dDeconvolve -input tshift_reg_blur_flanker1081009+orig tshift_reg_blur_flanker2081009+orig tshift_reg_blur_flanker3081009+orig -nfirst 0 -polort 2 \
-num_stimts 3 -basis_normall 1 \
-stim_times 1 ../stim_times_congruent.1D 'GAM' \
-stim_label 1 congruent \
-stim_times 2 ../stim_times_incongruent.1D 'GAM \
-stim_label 2 incongruent \
-stim_times 3 ../stim_times_neutral.1D 'GAM' \
-stim_label 3 neutral \
-num_glt 2 \
-glt_label 1 con_inc_diff \
-gltsym 'SYM:+congruent -incongruent' \
-glt_label 2 con_inc_ave \
-gltsym 'SYM:+0.5*congruent +0.5incongruent' \
-CENSORTR *:0-15 \
-fitts fit_ts -errts error_ts \
-xjpeg glm_matrix.jpg -tout -fout -bucket glm_flanker_${date}

cd ../

end
exit

When I try to run this, I get the following message in the xterm window: Unmatched '.

Can anyone help me with this? Is there any other information I should post?

Thank you in advance!

-Tali
Subject Author Posted

3dDeconvolve problem

Tali August 14, 2009 01:59PM

Re: 3dDeconvolve problem

Aisling Whitaker August 14, 2009 02:11PM

Re: 3dDeconvolve problem

Tali August 15, 2009 05:17PM

Re: 3dDeconvolve problem

rick reynolds August 16, 2009 12:03PM

Re: 3dDeconvolve problem

Tali August 17, 2009 05:06PM

Re: 3dDeconvolve problem

rick reynolds August 17, 2009 05:52PM

Re: 3dDeconvolve problem

Tali August 17, 2009 07:31PM

Re: 3dDeconvolve problem

rick reynolds August 17, 2009 08:03PM

Re: 3dDeconvolve problem

Tali August 21, 2009 10:22AM