AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 28, 2009 12:16PM
> Is that correct to say that the effect survives correction for multiple
> comparisons using a small-volume correction procedure?

SVC is a little controversial, but if the anatomical structure (superior parietal lobe) is the only region of interest in your whole study, you might pass the reviewers' scrutiny when lucky.

> When you run a conjunction analysis, how do you determine the T-values of
> voxels in the conjunction region?

If you've already corrected for multiple comparisons for each individual component of the conjunction analysis, the corrected p of the conjunction would be the same as your individual corrected p (e.g., 0.05). This is a little conservative, but that's the best we can do.

> How do I extract and convert to nifti only that specific subbrick?

If the sub-brick number is 5, try

3dAFNItoNIFTI -prefix myOutput myInput+tlrc'[5]'

HTH,
Gang
Subject Author Posted

SVC and other

Elisa September 27, 2009 03:48PM

Re: SVC and other

Gang Chen September 28, 2009 12:16PM

Re: SVC and other

Elisa September 28, 2009 12:53PM

Re: SVC and other

Gang Chen September 28, 2009 01:24PM

Re: SVC and other

Elisa September 28, 2009 01:58PM

Re: SVC and other

Gang Chen September 28, 2009 04:06PM

Re: SVC and other

Elisa September 28, 2009 04:39PM

Re: SVC and other

Gang Chen September 29, 2009 10:37AM

AFNItoNIFTI--subbrick

Elisa September 29, 2009 06:09PM

Re: AFNItoNIFTI--subbrick

Gang Chen September 29, 2009 06:16PM

Re: AFNItoNIFTI--subbrick

Elisa September 29, 2009 06:32PM

Re: AFNItoNIFTI--subbrick

Gang Chen September 30, 2009 09:41AM