AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 29, 2009 06:09PM

Hi Gang,
I need to convert a statistical map from afni to nifti to import it in mricron. That map, however, is one contrast from my ANOVA analysis. How do I extract and convert to nifti only that specific subbrick?

You suggested
If the sub-brick number is 5, try 3dAFNItoNIFTI -prefix myOutput myInput+tlrc'[5]'

Unfortunately it did not work. The procedure creates a nii file, but when I import it in mricron it is all blurred, as if it could not overlap it properly on the template. Any other suggestion?

Thanks a lot,

Elisa
Subject Author Posted

SVC and other

Elisa September 27, 2009 03:48PM

Re: SVC and other

Gang Chen September 28, 2009 12:16PM

Re: SVC and other

Elisa September 28, 2009 12:53PM

Re: SVC and other

Gang Chen September 28, 2009 01:24PM

Re: SVC and other

Elisa September 28, 2009 01:58PM

Re: SVC and other

Gang Chen September 28, 2009 04:06PM

Re: SVC and other

Elisa September 28, 2009 04:39PM

Re: SVC and other

Gang Chen September 29, 2009 10:37AM

AFNItoNIFTI--subbrick

Elisa September 29, 2009 06:09PM

Re: AFNItoNIFTI--subbrick

Gang Chen September 29, 2009 06:16PM

Re: AFNItoNIFTI--subbrick

Elisa September 29, 2009 06:32PM

Re: AFNItoNIFTI--subbrick

Gang Chen September 30, 2009 09:41AM