AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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giuseppe pagnoni
December 01, 2009 02:38AM
hi Rick,

pardon me for coming back on the same issue, but I am having second thoughts here..

1) Shouldn't the null hypothesis dataset indeed depend on the statistical model employed? We label 'noise' everything that our model can't explain, and in this perspective the smoothness of the residuals *should* vary with the statistical model employed (in fact, in afni_proc.py the smoothness is indeed estimated on the basis of the chosen statistical model, so change the model and the estimated smoothness will change). Now, why would this line of reasoning apply to individual analyses but not to group analyses?

2) Having a very good model does not necessarily imply that the residual image will be very smooth, since the model fit is done independently for each voxel while the smoothness is estimated spatially. Even if the model fits the data very well, it won't reasonably do so across the whole brain and therefore there will be patches of non-activated areas that can be quite spatially uncorrelated.

am i still not getting it??

thanks again for your patience

g.
Subject Author Posted

AlphaSim and group t-test: which smoothness?

Giuseppe Pagnoni October 21, 2009 06:21AM

Re: AlphaSim and group t-test: which smoothness?

rick reynolds October 21, 2009 09:28AM

Re: AlphaSim and group t-test: which smoothness?

Giuseppe Pagnoni October 21, 2009 01:23PM

Re: AlphaSim and group t-test: which smoothness?

rick reynolds October 21, 2009 05:54PM

Re: AlphaSim and group t-test: which smoothness?

Giuseppe Pagnoni October 22, 2009 02:28AM

Re: AlphaSim and group t-test: which smoothness?

giuseppe pagnoni December 01, 2009 02:38AM

Re: AlphaSim and group t-test: which smoothness?

rick reynolds December 01, 2009 10:35AM