AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Jingle
January 12, 2010 10:19AM
Hi Gang,
I'm not quite understand about the correlation data you send to me:
3dDeconvolve -input Face+base+orig \
-polort 3 \
-num_stimts 1 \
-concat '1D: 0 300 600 900 1200 1500' \
-stim_file 1 seed.1D -stim_label 1 seed \
-tout -rout -fitts fit_subj01 \
-bucket CorrIs it the correlation between
Is it the correlation between Face+base+orig and seed.1D?

And you say "maybe the step of regressing out those unrelated regressors is not good enough because that assumes a perfect response at EVERY event.", which means the 3dSynthesize can't really exclude those unrelated conditions, right?

Although the result looks not pretty good, we do not want to give up yet.
I still have questions about some steps of 3dGC:
1. The order of polynomials for baseline drift. I follow the defult 3, but am not sure what number I shold use.
2. Number of parallel jobs. Actually I completely do not know what is that mean....

Thanks for your help!!!!

Subject Author Posted

3dGC.R questions

Jingle December 01, 2009 04:52AM

Re: 3dGC.R questions

Gang Chen December 01, 2009 11:55AM

Re: 3dGC.R questions

Jingle December 02, 2009 02:10AM

Re: 3dGC.R questions

Jingle December 07, 2009 01:53AM

Re: 3dGC.R questions

Gang Chen December 07, 2009 05:38PM

Re: 3dGC.R questions

Jingle December 08, 2009 02:33AM

Re: 3dGC.R questions

Jingle December 15, 2009 02:24AM

Re: 3dGC.R questions

Jingle January 12, 2010 10:19AM

Re: 3dGC.R questions

Gang Chen January 12, 2010 03:44PM

Re: 3dGC.R questions

Chun-Chia January 21, 2010 02:13AM

Re: 3dGC.R questions

Gang Chen January 21, 2010 05:46PM

Re: 3dGC.R questions

Jingle February 20, 2010 02:50AM

Re: 3dGC.R questions

Gang Chen February 21, 2010 04:14PM

Re: 3dGC.R questions

Jingle February 23, 2010 02:44AM

Re: 3dGC.R questions

Jingle February 24, 2010 02:47AM

stim_times

Jingle March 08, 2010 02:33AM

3dGC.R group analysis

Matt April 04, 2010 10:08AM

Re: 3dGC.R group analysis

Gang Chen April 05, 2010 09:29AM

Re: 3dGC.R group analysis

Matt April 05, 2010 07:50PM