AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
April 12, 2010 11:26AM
I assume you are aligning all the EPI datasets to the single anatomical dataset with a series of align_epi_anat.py commands. If so, you should use the "-master_epi" option to set the master_epi dataset to be the anatomical dataset or "BASE" and set the output resolution to be some dimension like 3 mm with "-master_epi_dxyz 3". The "-giant_move" default assumes these kinds of large movements and sets the output resolution to be the minimum dimension of the input EPI dataset. You can do that with "MIN_DXYZ". Review the "-master_xxxx" option part of the align_epi_anat.py help for more information.
Subject Author Posted

Anatomical and EPIs "off screen" after alignment

Lisa Eyler April 09, 2010 05:52PM

Re: Anatomical and EPIs "off screen" after alignment

Ziad April 09, 2010 08:42PM

Re: Anatomical and EPIs "off screen" after alignment

Frank Haist April 10, 2010 04:21AM

Re: Anatomical and EPIs "off screen" after alignment

Daniel Glen April 12, 2010 11:26AM

Re: Anatomical and EPIs "off screen" after alignment

Lisa Eyler April 13, 2010 02:29PM

Re: Anatomical and EPIs "off screen" after alignment

Daniel Glen April 13, 2010 03:59PM

Re: Anatomical and EPIs "off screen" after alignment

Lisa Eyler April 13, 2010 04:26PM

Re: Anatomical and EPIs "off screen" after alignment

Daniel Glen April 13, 2010 04:57PM