AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
April 13, 2010 04:57PM
I think I see where your issue is. You are aligning the anatomical to the EPI data but keeping it in the original anatomical grid (which is the default). That can put the anatomical in a corner with oblique data. Add the options "-master_anat s003_facename_r02+orig -master_anat_dxyz 1" to your align_epi_anat.py command to have 1mm^3 output on the EPI dataset space.
Subject Author Posted

Anatomical and EPIs "off screen" after alignment

Lisa Eyler April 09, 2010 05:52PM

Re: Anatomical and EPIs "off screen" after alignment

Ziad April 09, 2010 08:42PM

Re: Anatomical and EPIs "off screen" after alignment

Frank Haist April 10, 2010 04:21AM

Re: Anatomical and EPIs "off screen" after alignment

Daniel Glen April 12, 2010 11:26AM

Re: Anatomical and EPIs "off screen" after alignment

Lisa Eyler April 13, 2010 02:29PM

Re: Anatomical and EPIs "off screen" after alignment

Daniel Glen April 13, 2010 03:59PM

Re: Anatomical and EPIs "off screen" after alignment

Lisa Eyler April 13, 2010 04:26PM

Re: Anatomical and EPIs "off screen" after alignment

Daniel Glen April 13, 2010 04:57PM