AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 07, 2011 03:32PM
> What I haven't gotten yet, though, is how I can contrast just the modulators of
> condition 1 and condition 2 by using -gltsym. How can I specify just the
> conditions or just the modulators in this contrast?

Jana, if you use something like the following in 3dDeconvolve

-stim_times_AM2 1 ... -stim_label 1 myCondition1
-stim_times_AM2 2 ... -stim_label 1 myCondition2

you can compare the modulation effect between the two conditions like this

-gltsym 'SYM: myCondition1[1] -myCondition2[1]'

The number '1' within the square brackets [] is meant to tell the program that you are interested in the second regressor (modulation) since the first one is indexed as 0.

HTH,
Gang
Subject Author Posted

parametric modulation

Jana January 05, 2011 01:57PM

Re: parametric modulation

Gang Chen January 06, 2011 09:49AM

Re: parametric modulation

Jana January 07, 2011 11:16AM

Re: parametric modulation

Gang Chen January 07, 2011 03:32PM

Re: parametric modulation

Jana January 08, 2011 11:45AM

Re: parametric modulation

Jana January 12, 2011 11:49AM

Re: parametric modulation

Gang Chen January 12, 2011 02:07PM

Re: parametric modulation

Jana January 12, 2011 02:42PM

Re: parametric modulation

rick reynolds January 12, 2011 03:17PM

Re: parametric modulation

Jana January 12, 2011 11:18PM

Re: parametric modulation

James January 13, 2011 06:16AM

Re: parametric modulation

Jana January 13, 2011 07:04AM

Re: parametric modulation

James January 13, 2011 07:46AM

Re: parametric modulation

Jana January 13, 2011 08:19AM

Re: parametric modulation

rick reynolds January 13, 2011 08:28AM

Re: parametric modulation

Jana January 13, 2011 10:09AM

Re: parametric modulation

rick reynolds January 13, 2011 12:03PM

Re: parametric modulation

Jana January 13, 2011 12:22PM

Re: parametric modulation

Jana January 14, 2011 06:56AM

Re: parametric modulation

rick reynolds January 14, 2011 08:33AM

Re: parametric modulation

Jana January 14, 2011 09:57AM