AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 28, 2012 09:12PM
Hi Liana,

Let me just make a few points:

1. Motion will tend to cause outliers, so the TRs above each of the
limits might entirely overlap.

2. Motion censoring censors the previous TR, as well as the current,
since we do not know when the motion occurs. Ah, you noted this.

3. Even with censoring the previous TR, high motion often occurs over
multiple TRs, e.g. with 4 consecutive high motion TRs, only 5 will be
censored, not 8. And if they were to start a run, it would only be 4.

4. The number of counted TRs per stim class are those with a non-zero
regressor (i.e. non-zero expected BOLD response), and BOLD response
periods tend to have overlap across regressors.

5. So 72 and 81 TRs censored per stim class (total of 153) just means
there were 5 (or more) TRs censored when both BOLD IRFs were non-zero.

It's really great that you are paying such close attention to the scripts,
results, output and even program help!

I would be happy to provide more details if you would like them.

- rick
Subject Author Posted

3dToutcoun​t and censoring volumes

Tim Souza May 16, 2012 11:18AM

Re: 3dToutcoun​t and censoring volumes

rick reynolds May 16, 2012 11:24AM

Re: 3dToutcoun​t and censoring volumes

lianablair June 21, 2012 04:20PM

Re: 3dToutcoun​t and censoring volumes

Peter Molfese June 21, 2012 08:23PM

Re: 3dToutcoun​t and censoring volumes

rick reynolds June 21, 2012 09:07PM

Re: 3dToutcoun​t and censoring volumes

lianablair June 27, 2012 04:04PM

Re: 3dToutcoun​t and censoring volumes

rick reynolds June 27, 2012 04:13PM

Re: 3dToutcoun​t and censoring volumes

lianablair June 28, 2012 12:18PM

Re: 3dToutcoun​t and censoring volumes

rick reynolds June 28, 2012 12:32PM

Re: 3dToutcoun​t and censoring volumes

lianablair June 28, 2012 04:55PM

Re: 3dToutcoun​t and censoring volumes

rick reynolds June 28, 2012 09:12PM

Re: 3dToutcoun​t and censoring volumes

lianablair June 29, 2012 11:47AM

Re: 3dToutcoun​t and censoring volumes

lianablair July 10, 2012 03:13PM

Re: 3dToutcoun​t and censoring volumes

rick reynolds July 10, 2012 09:28PM