Hi John,
How did you do the sorting, or were the files already sorted
by volume and then slice location?
It is a little strange that you needed to use 3dresample to
fix the -dicom_org dataset, which suggests there is some
obliquity matrix that is inverted against the -dicom_org
slice ordering. But that suggests that the ordering from
the header is not actually correct, but the alphabetical
one is.
In any case, it sounds like the scanner is saving the files in
the correct order, though the DICOM fields are not populated
for correct sorting by Dimon.
- rick
