AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 09, 2014 03:49PM
Hi Bridget,

You should be using Usage 1 (see help) for transforming your structural data to standard space and then Usage 2 to apply the same transform (created in in Usage 1) to your functional data. So a standard pipeline might look like this:

#transform anatomical, assumes anatomical has skull on, otherwise add -no_ss
@auto_tlrc -base TT_N27+tlrc -input Subj_Anatomical+orig -init_xform AUTO_CENTER

#transform functional EPI
@auto_tlrc -apar Subj_ Anatomical+tlrc -input Subj_EPI+orig -dxyz 3

Is this what you're currently using?
Subject Author Posted

@auto_tlrc brains not aligned

BridgetC December 09, 2014 01:10PM

Re: @auto_tlrc brains not aligned

Peter Molfese December 09, 2014 03:49PM

Re: @auto_tlrc brains not aligned

BridgetC December 09, 2014 04:28PM

Re: @auto_tlrc brains not aligned

Peter Molfese December 09, 2014 04:52PM

Re: @auto_tlrc brains not aligned

BridgetC December 10, 2014 10:20AM

Re: @auto_tlrc brains not aligned

Peter Molfese December 10, 2014 10:41AM

Re: @auto_tlrc brains not aligned

BridgetC December 10, 2014 11:28AM