AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 09, 2014 04:52PM
A couple more questions:

1) Is there any consistent artifact or feature in the anatomicals that aren't ending up aligned? Perhaps remnants of skull from a bad skull-strip?

2) Are you aligning your EPI to anatomical using align_epi_anat.py?

3) Have you tried using 3dUnifize to adjust for any odd shading artifacts?
Subject Author Posted

@auto_tlrc brains not aligned

BridgetC December 09, 2014 01:10PM

Re: @auto_tlrc brains not aligned

Peter Molfese December 09, 2014 03:49PM

Re: @auto_tlrc brains not aligned

BridgetC December 09, 2014 04:28PM

Re: @auto_tlrc brains not aligned

Peter Molfese December 09, 2014 04:52PM

Re: @auto_tlrc brains not aligned

BridgetC December 10, 2014 10:20AM

Re: @auto_tlrc brains not aligned

Peter Molfese December 10, 2014 10:41AM

Re: @auto_tlrc brains not aligned

BridgetC December 10, 2014 11:28AM