AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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December 10, 2014 10:41AM
Hi Bridget,

I would recommend using align_epi_anat.py to do the EPI to anat and EPI to standard space transform. You can use syntax similar to the example:

@auto_tlrc -base ~/abin/TT_N27+tlrc -input sb23_mpra+orig
align_epi_anat.py -anat sb23_mpra+orig -epi epi_r03+orig      \
            -epi_base 6 -child_epi epi_r??+orig.HEAD    \
            -epi2anat -suffix _al -tlrc_apar sb23_mpra_at+tlrc

Better still, would be to use afni_proc.py for processing your data, which will take care of all of the preprocessing and single-subject analyses.
Subject Author Posted

@auto_tlrc brains not aligned

BridgetC December 09, 2014 01:10PM

Re: @auto_tlrc brains not aligned

Peter Molfese December 09, 2014 03:49PM

Re: @auto_tlrc brains not aligned

BridgetC December 09, 2014 04:28PM

Re: @auto_tlrc brains not aligned

Peter Molfese December 09, 2014 04:52PM

Re: @auto_tlrc brains not aligned

BridgetC December 10, 2014 10:20AM

Re: @auto_tlrc brains not aligned

Peter Molfese December 10, 2014 10:41AM

Re: @auto_tlrc brains not aligned

BridgetC December 10, 2014 11:28AM