Hi, Kelly-
<< Does anyone have experience running DTI analysis in AFNI? >>
--> Yes.
There is a fair amount of step-by-step documentation here, with commands/scripts:
[
afni.nimh.nih.gov]
Some of the lectures+PDFs here might be useful:
[
afni.nimh.nih.gov]
And finally, some more help on specific programs in AFNI:
[
afni.nimh.nih.gov]
<< Species: pig! >>
--> No. (Or, more accurately, I don't...)
I would imagine some of the basic steps would be quite similar to humans (data conversion, alignment, tensor fitting, etc.). However, there might be some special flags/options to use in the TORTOISE preprocessing steps (see the first link above, "9.2.6. Preproc: TORTOISE") for non-human brains; I believe that they recommend some specific settings for macaques and smaller mammals, for example.
--pt
Edited 1 time(s). Last edit at 08/28/2018 10:39AM by ptaylor.
