Hello,
I have previously created ROI:s using e.g.
Make ACC mask named ACC_mask
whereami -prefix ACC_mask -mask_atlas_region 'TT_Daemon::ACC'
Make Insula mask named insula_mask
whereami -prefix insula_mask -mask_atlas_region 'TT_Daemon::insula'
I think the whereami command is kind of complicated and I get stuck now that we have swapped to the MNI152_2009_template.nii.gz as our template during pre-proc.
I saw a lot of old posts asking similar questions but in 2013 AFNI did not offer atlases for MNI space and the MNI_ANAT was apparently shifted in regard to the MNI space.
I simply wan to create a hypothalamus ROI using something like
whereami -prefix hyp_thal_ROI -mask_atlas_region 'MNI??::hypothalamus'
but I don't know the name of a potential MNI-atlas and what that sub-region would be called.
Can someone help?
Thanks!
