AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 06, 2019 01:57AM
I have added a new option to 3dTrackID called "-trk_opp_orient":
-trk_opp_orient :If outputting *.trk files, you can choose to oppositize
                     the voxel_order parameter for the TRK file (only).
                     Thus, when inputting AFNI files with orient RAI, the
                     *.trk file would have voxel_order LPS; this is so that
                     files can be viewed in some other software, such as DTK.

Please let me know if that works. You might also want to check on resampled data that has other orientations than just RAI (in AFNI-speak).

It is available in the most recent binaries, so you can update your AFNI version to get it. Please let me know if that sorts things out for you using TRK output in DTK.

-pt
Subject Author Posted

the trk output from 3dTrackID have an empty "vox_to_ras" field

lzhyoung March 19, 2019 01:45AM

Re: the trk output from 3dTrackID have an empty "vox_to_ras" field

ptaylor March 19, 2019 10:24AM

Re: the trk output from 3dTrackID have an empty "vox_to_ras" field

lzhyoung March 19, 2019 09:06PM

Re: the trk output from 3dTrackID have an empty "vox_to_ras" field

lzhyoung May 31, 2019 02:15AM

Re: the trk output from 3dTrackID have an empty "vox_to_ras" field

ptaylor May 31, 2019 07:14AM

Re: the trk output from 3dTrackID have an empty "vox_to_ras" field

lzhyoung June 02, 2019 09:26PM

Re: the trk output from 3dTrackID have an empty "vox_to_ras" field

ptaylor June 06, 2019 01:57AM