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st
June 21, 2019 12:14PM
Hello experts

I ran @sswarper on a subject [@sswarper $inputT1 $subid -deoblique]. It took about 11-12 hours for a single subject. The second subject is also taking just as long.

The T1 image dims are 174 x 213 x213 (res is 1 x 0.94 x 0.94 mm).
afni -ver is slightly outdated AFNI_17.2.07
But the script running on a server with 96 cpus and I set OMP_NUM_THREADS=48
I have the terminal output (from without -verb) if needed. The output is fine...the images look alright.

Is this a typical amount of time for one image? Can the older afni -ver be the issue?

Thank you for the help

Shankar
Subject Author Posted

@sswarper speed

st June 21, 2019 12:14PM

Re: @sswarper speed

ptaylor June 21, 2019 01:17PM

Re: @sswarper speed

ptaylor June 21, 2019 01:57PM

Re: @sswarper speed

st June 21, 2019 03:51PM

Re: @sswarper speed

ptaylor June 21, 2019 04:08PM

Re: @sswarper speed

st June 21, 2019 09:58PM

Re: @sswarper speed

ptaylor June 21, 2019 11:17PM

Re: @sswarper speed

st June 22, 2019 02:00PM

Re: @sswarper speed

ptaylor June 22, 2019 02:33PM