Hi ptaylor,
Here is the command after @animal_warper
# afni_proc.py -subj_id Oliver2019_02_02 -script \
# /8_Func_AFNI/Oliver2019_02_02/proc.Oliver2019_02_02 \
# -scr_overwrite -out_dir \
# /8_Func_AFNI/Oliver2019_02_02/Oliver2019_02_02.results \
# -blocks tshift align tlrc volreg blur mask scale regress -dsets \
# /12_Afni_animal/Oliver2019_02_02/BOLD_restingstate_deob.nii.gz \
# -copy_anat \
# /12_Afni_animal/Oliver2019_02_02/anatT1_deob_ns.nii.gz \
# -anat_has_skull no -tcat_remove_first_trs 10 -volreg_align_to \
# MIN_OUTLIER -volreg_align_e2a -volreg_tlrc_warp -align_opts_aea \
# -epi_strip 3dAutomask -cost lpa+zz -giant_move -check_flip \
# -align_epi_strip_method None -tlrc_base \
# /2_Atlas/nmt_1.2/NMT_SS.nii.gz \
# -tlrc_NL_warp -tlrc_NL_warped_dsets \
# /12_Afni_animal/Oliver2019_02_02/anatT1_deob_warp2std_nsu.nii.gz \
# /12_Afni_animal/Oliver2019_02_02/anatT1_deob_shft_al2std_mat.aff12.1D \
# /12_Afni_animal/Oliver2019_02_02/anatT1_deob_shft_WARP.nii.gz \
# -blur_size 2.0 -regress_censor_motion 0.35 -regress_censor_outliers \
# 0.02 -regress_motion_per_run -regress_run_clustsim no -execute
tks again!
