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February 19, 2020 05:01PM
Hi-

Hmm, I am not sure. I just tried running this, which is a similar command to what you are running (just different file names), using the data in the AFNI Bootcamp directory AFNI_data6/FT_analysis/FT/SUMA, and it ran fine:
SurfSmooth \
  -spec std.141.FT_lh.spec \
  -surf_A std.141.lh.smoothwm.gii \
  -met HEAT_07 \
  -input std.141.lh.sulc.niml.dset \
  -target_fwhm 6 \
  -Niter -1 \
  -output TEST.niml.dset

What is your "$SUMA_path/mesh140.${subj}_"$h".spec" dset, and how was it generated (I don't think it was created by @SUMA_Make_Spec_FS)? I am not familiar with what that is; I assume that $h is the hemisphere ("lh" or "rh").

--pt



Edited 1 time(s). Last edit at 02/21/2020 06:09AM by ptaylor.
Subject Author Posted

Surfsmooth error

franciscoara February 19, 2020 04:31PM

Re: Surfsmooth error

ptaylor February 19, 2020 05:01PM

Re: Surfsmooth error

franciscoara February 20, 2020 12:11PM

Re: Surfsmooth error

ptaylor February 20, 2020 01:20PM

Re: Surfsmooth error

franciscoara February 20, 2020 06:54PM

Re: Surfsmooth error

ptaylor February 21, 2020 06:09AM

Re: Surfsmooth error

franciscoara February 24, 2020 02:02PM

Re: Surfsmooth error

ptaylor February 24, 2020 03:47PM

Re: Surfsmooth error Attachments

franciscoara February 27, 2020 06:00PM

Re: Surfsmooth error

franciscoara March 04, 2020 03:06PM