AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 20, 2020 12:11PM
Hi,

Thank you for your answer, yes I have another data from other experiments before and it ran well with those (the only difference is, apart from the task and subjetcs, that these data is from a 1.5 T machine, using a TR=3.5s, while the other is from a 3 T machine, using TR=1.5 s). Yes, I have the paths like this in the script:

set top_path = /Users/neurociencia/Desktop/Semantic_Priming/

set data_path = "${top_path}/DICOM/DICOM-${subj}/Deconvolve"

set SUMA_path = "${top_path}/freesurfer_files/${subj}/SUMA"

Yes I used @SUMA_Make_Spec_FS to create the specs and they seem fine, and you're right $h is for both hemispheres lh and rh.

I have varied the target_fwhm value up and down with the same results and as I do not use cmask, I do not have the same problem as the other surfsmooth entrance of this message board.

Any help with be greatly appreciated.
Subject Author Posted

Surfsmooth error

franciscoara February 19, 2020 04:31PM

Re: Surfsmooth error

ptaylor February 19, 2020 05:01PM

Re: Surfsmooth error

franciscoara February 20, 2020 12:11PM

Re: Surfsmooth error

ptaylor February 20, 2020 01:20PM

Re: Surfsmooth error

franciscoara February 20, 2020 06:54PM

Re: Surfsmooth error

ptaylor February 21, 2020 06:09AM

Re: Surfsmooth error

franciscoara February 24, 2020 02:02PM

Re: Surfsmooth error

ptaylor February 24, 2020 03:47PM

Re: Surfsmooth error Attachments

franciscoara February 27, 2020 06:00PM

Re: Surfsmooth error

franciscoara March 04, 2020 03:06PM