afni.nimh.nih.gov

Howdy-

Thanks for showing those images. The anatomical-template alignment looks quite good to me.

It is a bit hard to judge the EPI-anatomical alignment. I guess you are using a somewhat old version of AFNI (from before May, 2020)? The QC HTML now puts the EPI as underlay and anatomical dset as overlay edges, for this reason; it makes it easier to see if internal structures line up well. The modern QC also reports about obliquity.

If it's OK, I will share a Box drive with you to see the data in vivo.

thanks,
pt