Hi Rick,
thank you for the response and the tip about -no_images option. Now it runs through without error messages.
However, the output is the same - a face NIFTI image and a BRIK/HEAD pair. There is no NIFTI image for the output.
This happens if I specify a single mode. Interestingly, if I use -mode_all option, then it does generate NIFTI images for the output, in addition to face and face_plus NIFTI images.
This is also reflected in the final 3dcopy commands. If I run with single mode, then it is something like:
+++ Command Echo:
3dcopy tmp.99.result.deface.nii ../dzne_MPRAGE_1iso_PAT2_s03_deface
And when I run with -mode_all option, it is:
+++ Command Echo:
3dcopy tmp.99.result.reface_plus.nii ../dzne_MPRAGE_1iso_PAT2_s03.reface_plus.nii.gz
++ 3dcopy: AFNI version=AFNI_22.1.02 (Apr 6 2022) [64-bit]
+++ Command Echo:
3dcopy tmp.99.result.reface.nii ../dzne_MPRAGE_1iso_PAT2_s03.reface.nii.gz
++ 3dcopy: AFNI version=AFNI_22.1.02 (Apr 6 2022) [64-bit]
+++ Command Echo:
3dcopy tmp.99.result.deface.nii ../dzne_MPRAGE_1iso_PAT2_s03.deface.nii.gz
Notice the nii.gz extension for the 3dcopy target in the latter case. This is probably the reason why there is no NIFTI output when run in single mode? Can I get it without running all three modes?
Thank you!
Best,
Renat.
