Hi Paul,
here is the output:
1 1 1 1 1 ACW_Awake_Global.nii
1 1 1 1 1 Resample_Yeo7N_1000ribbon.nii
1 1 1 1 1 errts.Subject1_Awake.anaticor
And you are right. I guess that I can skip using the "Resample_Yeo7N_1000ribbon.nii" here, and directly use the coordinates from the .errts file.
However, now I tell you something interesting.
When I don't mirror the y coordinates in Python, that is, when I don't run y = y * -1 on them, I again get the
*+ WARNING: File /volumes/sandisk/fmri/dataset_3/processed/Extracted_ACW_Awake/acw_Global.1D line 14333: y coord=-97.5 is outside -96.003 .. 132.003
*+ WARNING: File /volumes/sandisk/fmri/dataset_3/processed/Extracted_ACW_Awake/acw_Global.1D line 14334: y coord=-97.5 is outside -96.003 .. 132.003
*+ WARNING: File /volumes/sandisk/fmri/dataset_3/processed/Extracted_ACW_Awake/acw_Global.1D line 14335: y coord=-97.5 is outside -96.003 .. 132.003
*+ WARNING: File /volumes/sandisk/fmri/dataset_3/processed/Extracted_ACW_Awake/acw_Global.1D line 14336: y coord=-97.5 is outside -96.003 .. 132.003
*+ WARNING: File /volumes/sandisk/fmri/dataset_3/processed/Extracted_ACW_Awake/acw_Global.1D line 14987: y coord=-97.5 is outside -96.003 .. 132.003
*+ WARNING: File /volumes/sandisk/fmri/dataset_3/processed/Extracted_ACW_Awake/acw_Global.1D line 14988: y coord=-97.5 is outside -96.003 .. 132.003
*+ WARNING: File /volumes/sandisk/fmri/dataset_3/processed/Extracted_ACW_Awake/acw_Global.1D line 14989: y coord=-97.5 is outside -96.003 .. 132.003
*+ WARNING: File /volumes/sandisk/fmri/dataset_3/processed/Extracted_ACW_Awake/acw_Global.1D line 14990: y coord=-97.5 is outside -96.003 .. 132.003
error for maaaaannyyy voxels in AFNI’s 3dUndump. However, even when I now run the 3dinfo grid check on those files, that is, including the 3dUndump NIfTI file that uses the original y-coordinates (and not the ones mirrored in Python), I get the following output:
1 1 1 1 1 ACW_Awake_Global.nii
1 1 1 1 1 Resample_Yeo7N_1000ribbon.nii
1 1 1 1 1 errts.Subject1_Awake.anaticor
Isn't that strange?
