AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 19, 2003 03:12PM
Hi afni experts

I am designing an fMRI experiment using AFNI HowTo's stim as a template (stim randomization etc..).

when I run the script using

waver -GAM -dt .500 -input RSF.stim.${iter}.1.1D > wav.hrf.${iter}.1.1D
waver -GAM ...etc

I have no error messages and it works fine.

However when I run the script using:

waver -GAM -dt 3.0 -numout 684 -inline 3@1 0@1 -input RSF.stim.${iter}.1.1D > wav.hrf.${iter}.1.1D
waver -GAm -dt 3.0 -etc...

I used -numout 684 for my number of TR's
and -inline 3@1 (3 on's)
followed by 0@1 (0 off's)

I get the following error message:

unable to read time series file wav.hrf.001.1.1D

so i was wondering whether the @stim_analyze script can use the options
-nomout and -inline


Please kindly advise,
Thanks,
Jasmin

Subject Author Posted

wav.hrf.${iter}.#D

jasmin salloum November 19, 2003 03:12PM

Re: wav.hrf.${iter}.#D

rick reynolds November 19, 2003 03:54PM

Re: wav.hrf.${iter}.#D

jasmin salloum November 19, 2003 04:10PM

Re: wav.hrf.${iter}.#D

Gang Chen November 19, 2003 04:25PM

Re: wav.hrf.${iter}.#D

jasmin salloum November 19, 2003 04:45PM

Re: wav.hrf.${iter}.#D

Gang Chen November 19, 2003 04:54PM

Re: wav.hrf.${iter}.#D

jasmin salloum November 19, 2003 05:02PM

Re: wav.hrf.${iter}.#D

Gang Chen November 19, 2003 05:15PM

Re: wav.hrf.${iter}.#D

Gang Chen November 19, 2003 03:58PM