AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 11, 2004 01:44PM
Hi Joel,

Actually, this is normal, though it may seem a little strange.
The basic point is that the warps are applied to the datasets
(and in fact, must be applied to your test dataset, because it
doesn't have a tlrc view).

So in tlrc view, the test dataset must be warped. But since
there is no warped test data, the warp in the current tlrc
dataset is applied. But in the case of the norm_warped_axial
dataset, it's transformation does not apply to the test dataset,
and the warp throws it out of range.

You need to do 2 things:

1. Actually write out the test+tlrc dataset. To do this, use
warped_axial as the underlay and test as the overlay, go into
the tlrc view, and "write -> Olay".

2. Move the test+orig dataset out of the current directory.

Now the Talairach viewing should be fine.

I am not quite sure why step 2 is necessary. But it most likely
goes back to the fact that afni assumes that all datatsets in a
single directory are registered. Even if you are using tlrc view,
the orig datasets are still there.

You may also want to write out the tlrc view of warped_axial.

- rick

Subject Author Posted

More AFNI coordinate system translation problems

Joel Welling June 09, 2004 08:22PM

Re: More AFNI coordinate system translation problems

rick reynolds June 10, 2004 01:16PM

Re: More AFNI coordinate system translation problems

Joel Welling June 10, 2004 05:23PM

Re: More AFNI coordinate system translation problems

rick reynolds June 11, 2004 01:44PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 03:14PM

Re: More AFNI coordinate system translation problems

rick reynolds June 11, 2004 04:02PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 04:48PM

Re: More AFNI coordinate system translation problems

rick reynolds June 11, 2004 05:31PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 05:44PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 06:16PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 07:08PM

Re: More AFNI coordinate system translation problems

rick reynolds June 14, 2004 08:50AM

Re: More AFNI coordinate system translation problems

Joel Welling June 14, 2004 03:00PM

Re: More AFNI coordinate system translation problems

rick reynolds June 14, 2004 03:55PM

Re: More AFNI coordinate system translation problems

Joel Welling June 15, 2004 04:39PM

Re: More AFNI coordinate system translation problems

Joel Welling June 15, 2004 05:14PM

Re: More AFNI coordinate system translation problems

rick reynolds June 16, 2004 11:23AM

Re: More AFNI coordinate system translation problems

Joel Welling June 17, 2004 03:24PM

Re: More AFNI coordinate system translation problems

Donna Hanlon June 18, 2004 08:57AM

Re: More AFNI coordinate system translation problems

Joel Welling June 18, 2004 01:37PM

Re: More AFNI coordinate system translation problems

rick reynolds June 19, 2004 02:25PM

Re: More AFNI coordinate system translation problems

Joel Welling July 01, 2004 07:46PM

Re: More AFNI coordinate system translation problems

rick reynolds July 02, 2004 08:20AM

Re: More AFNI coordinate system translation problems

Joel Welling July 06, 2004 03:40PM