AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 11, 2004 03:14PM
Something is still missing here. I have another dataset, test2+tlrc, which is already Talairach'd and exists within the same volume of space as norm_warped_axial+tlrc and warped_axial+tlrc (according to 3dinfo). I can supply it if you want- it's the output of exactly the process you suggest, if I'm understanding you correctly. It, too, is visible when the anatomy is warped_axial but not when it is norm_warped_axial.

This is annoying because my goal is to produce Taliarach'd functional datasets from +orig functional datasets using AFNI's "adwarp", with a Taliarach'd anatomical dataset compatible with our software as the geometry prototype. What appears to be happening when I try to do this is that I get a lovely dataset of all zero's when I use a dataset in the format of norm_warped_axial+tlrc as the prototype, but a perfectly fine one when I use warped_axial+tlrc as the prototype. warped_axial and norm_warped_axial are structurally identical, but one uses the RAI orientation and the other uses RAS (which is compatible with our coordinate system).

-Joel
Subject Author Posted

More AFNI coordinate system translation problems

Joel Welling June 09, 2004 08:22PM

Re: More AFNI coordinate system translation problems

rick reynolds June 10, 2004 01:16PM

Re: More AFNI coordinate system translation problems

Joel Welling June 10, 2004 05:23PM

Re: More AFNI coordinate system translation problems

rick reynolds June 11, 2004 01:44PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 03:14PM

Re: More AFNI coordinate system translation problems

rick reynolds June 11, 2004 04:02PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 04:48PM

Re: More AFNI coordinate system translation problems

rick reynolds June 11, 2004 05:31PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 05:44PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 06:16PM

Re: More AFNI coordinate system translation problems

Joel Welling June 11, 2004 07:08PM

Re: More AFNI coordinate system translation problems

rick reynolds June 14, 2004 08:50AM

Re: More AFNI coordinate system translation problems

Joel Welling June 14, 2004 03:00PM

Re: More AFNI coordinate system translation problems

rick reynolds June 14, 2004 03:55PM

Re: More AFNI coordinate system translation problems

Joel Welling June 15, 2004 04:39PM

Re: More AFNI coordinate system translation problems

Joel Welling June 15, 2004 05:14PM

Re: More AFNI coordinate system translation problems

rick reynolds June 16, 2004 11:23AM

Re: More AFNI coordinate system translation problems

Joel Welling June 17, 2004 03:24PM

Re: More AFNI coordinate system translation problems

Donna Hanlon June 18, 2004 08:57AM

Re: More AFNI coordinate system translation problems

Joel Welling June 18, 2004 01:37PM

Re: More AFNI coordinate system translation problems

rick reynolds June 19, 2004 02:25PM

Re: More AFNI coordinate system translation problems

Joel Welling July 01, 2004 07:46PM

Re: More AFNI coordinate system translation problems

rick reynolds July 02, 2004 08:20AM

Re: More AFNI coordinate system translation problems

Joel Welling July 06, 2004 03:40PM