AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 26, 2007 04:58PM
Thanks Rick - Here's another question regarding the use of to3d to build functional datasets, followed by 3dTshift to shift and de-trend the data. I created func files using:

to3d -epan –prefix S1-voice-epan -save_outliers S1-voice-out.1D -time:tz 214 26 3500 @offsets.1D S1-voice.\*

and offsets.1D looks like this:

2700 2592 2484 2376 2268 2160 2052 1944 1836 1728 1620 1512 1404 1296 1188 1080 972 864 756 648 540 432 324 216 108 0

To actually time-shift the data, I'm assuming that one needs to include the '-tpattern' option in 3dTshift. Is that correct? Here's the command line for 3dTshift:

3dTshift -prefix S1-voice-shift -tpattern @offsets.1D -ignore 10 -rlt+ S1-voice-epan+orig

but 3dTshift does not run, unless I change the dimension in offsets.1D to seconds (2.7 2.592 2.484 2.376 etc.). Does one program work in ms and the other in sec?

I am also assuming that once this shift function is implemented, I do not need to time-shift the data in any subsequent preprocessing steps (e.g. I do not need to use the '-tshift' option in 3dvolreg). Is this correct?

Thanks again for your help,
Tom

Subject Author Posted

TR and interscan interval

Silvia Casarotto October 21, 2004 04:40AM

Re: TR and interscan interval

rick reynolds October 21, 2004 03:32PM

Re: TR and interscan interval

Wolfgang Gaggl October 21, 2004 06:08PM

Re: TR and interscan interval

rick reynolds October 21, 2004 06:32PM

Re: TR and interscan interval

Tom Christensen September 24, 2007 12:52PM

Re: TR and interscan interval

rick reynolds September 24, 2007 01:20PM

Re: TR and interscan interval

Tom Christensen September 26, 2007 04:58PM

Re: TR and interscan interval

rick reynolds September 26, 2007 07:05PM