rick,
the t2 image in afni format was uploaded under the name t2_upload_afniboard.tar.
here is part of the 3dinfo output:
Data Axes Orientation:
first (x) = Right-to-Left
second (y) = Anterior-to-Posterior
third (z) = Superior-to-Inferior [-orient RAS]
R-to-L extent: -115.469 [R] -to- 103.672 [L] -step- 0.859 mm [256 voxels]
A-to-P extent: -141.937 [A] -to- 77.204 [P] -step- 0.859 mm [256 voxels]
I-to-S extent: -90.027
-to- 39.973 [S] -step- 5.000 mm [ 27 voxels]
Does it cause the probem that the orientation is defined as RAS but the I-to-S extent is
-90.027 -to- 39.973 [S] ?
If you look at the data, please note that the external landmark is on the right side.
Thanks,
george
