AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Robert Cox
February 01, 2005 03:41PM
You don't use "-stim_minlag" or "-stim_maxlag" with "-stim_times" ; these 2 options are for use with the alternative (and older) mechanism "-stim_file".

If you have 6 different stimulus classes (as your use of "-num_stimts" would indicate), then you need to have 6 different uses of "-stim_times" on the command line. You would separate the times for the different classes into different files. Then you could do

3dDeconvolve -input S1_all_runs+orig -nfirst 0 -nlast 495 -num_stimts 6 \
-stim_file 1 S1_trialA.1D GAM -stim_label 1 A \
-stim_file 2 S1_trialB.1D GAM -stim_label 1 B \
-stim_file 3 S1_trialC.1D GAM -stim_label 1 C \
-stim_file 4 S1_trialD.1D GAM -stim_label 1 D \
-stim_file 5 S1_trialE.1D GAM -stim_label 1 E \
-stim_file 6 S1_trialF.1D GAM -stim_label 1 F \
... (other options here to get some output, like -iresp) ...

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Subject Author Posted

Regression with stim timing

Brian January 31, 2005 04:13PM

Re: Regression with stim timing

Robert Cox January 31, 2005 04:52PM

Re: Regression with stim timing

Brian February 01, 2005 09:20AM

Re: Regression with stim timing

Robert Cox February 01, 2005 10:02AM

Re: Regression with stim timing

Brian February 01, 2005 02:59PM

Re: Regression with stim timing

Robert Cox February 01, 2005 03:41PM