Hi,
I just ran a 3dANOVA2 -type 3 on my data, using subjects as the random variable, and the different conditions as the fixed variable. Earlier, I had used the 3dANOVA command to run a single factor ANOVA on the same data. To my surprise, the 3dANOVA2 output shows much more activation than the single factor, fixed effects ANOVA in all conditions and comparisons. Is this normal or should the activation be less? Does it say something about our data that this result comes up consistently? Any additional insight would be greatly appreciated. Thanks so much!
-Mariko