AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Oori
March 09, 2006 11:02AM
Hello All,

I would like to run SUMA command line utils on a system that does not have openmotif installed. It's x86_64 GNU/Linux system. Most of the libs are there, but not libXm [ldd output attached below]. We managed to bring in the necessary lib, but do not have permissions to put it in the system path (and the sysadmin is not very responsive).

Is there any ENV variable we could set to tell suma utils to find libXm.so.3 in the directory where we had put it? I tried LIBPATH and LD_LIBRARY_PATH without success.

Cheers,
Oori


ldd SurfToSurf
libXm.so.3 => not found
libGLU.so.1 => /usr/lib64/libGLU.so.1 (0x0000002a9566d000)
libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000002a957f1000)
libXmu.so.6 => /usr/X11R6/lib64/libXmu.so.6 (0x0000002a959b5000)
libXp.so.6 => /usr/X11R6/lib64/libXp.so.6 (0x0000002a95acd000)
libXt.so.6 => /usr/X11R6/lib64/libXt.so.6 (0x0000002a95bd6000)
libXext.so.6 => /usr/X11R6/lib64/libXext.so.6 (0x0000002a95d3a000)
libX11.so.6 => /usr/X11R6/lib64/libX11.so.6 (0x0000002a95e4b000)
libz.so.1 => /lib64/libz.so.1 (0x0000002a9605b000)
libm.so.6 => /lib64/tls/libm.so.6 (0x0000002a9616f000)
libc.so.6 => /lib64/tls/libc.so.6 (0x0000002a962c6000)
libstdc++.so.5 => /usr/lib64/libstdc++.so.5 (0x0000002a964e7000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000002a966c5000)
libpthread.so.0 => /lib64/tls/libpthread.so.0 (0x0000002a967d0000)
libXxf86vm.so.1 => /usr/X11R6/lib64/libXxf86vm.so.1 (0x0000002a968e4000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000002a969ea000)
libSM.so.6 => /usr/X11R6/lib64/libSM.so.6 (0x0000002a96aed000)
libICE.so.6 => /usr/X11R6/lib64/libICE.so.6 (0x0000002a96bf7000)
/lib64/ld-linux-x86-64.so.2 => /lib64/ld-linux-x86-64.so.2 (0x0000002a95556000)
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Subject Author Posted

Running Suma command line utils on system without libXm

Oori March 09, 2006 11:02AM

Re: Running Suma command line utils on system without libXm

rick reynolds March 09, 2006 01:50PM

Re: Running Suma command line utils on system without libXm

Oori March 10, 2006 11:31PM

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