Hi Rick,
Thanks for your help. After running the comand line:
Dimon -infile_pattern '*.dcm' -dicom_org -GERT_Reco -quit
I got the GERT_Reco_dicom script and 128 files such as dimon.files.run.395~522. Then ./GERT_Reco_dicom after set OutPrefix = 'test' , I got 128 afni brick, but the same slice. Did I do some wrong or miss some argument? Please tell me what I should do further? Thanks again.
GERT_Reco_dicom script as the followings:
#!/bin/tcsh
# This script was automatically generated by 'Dimon'.
#
# Please modify the following options for your own evil uses.
set OutlierCheck = '' # use '-skip_outliers' to skip
set OutPrefix = '' # prefix for datasets
to3d -prefix ${OutPrefix}_run_395 \
-time:zt 1 1 0 alt+z \
-@ < dimon.files.run.395
to3d -prefix ${OutPrefix}_run_396 \
-time:zt 1 1 0 alt+z \
-@ < dimon.files.run.396
.......
.......
to3d -prefix ${OutPrefix}_run_521 \
-time:zt 1 1 0 alt+z \
-@ < dimon.files.run.521
to3d -prefix ${OutPrefix}_run_522 \
-time:zt 1 1 0 alt+z \
-@ < dimon.files.run.522
############################
Haibo