AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Haibo Xu
March 14, 2006 03:43AM
Hi Rick,

Our data have been transferred to MV300 workstation (Magic view, Siemens Co.) from Siemens MR scanner, then saved as a dicom format into the window system or FAT system. The data are converted to SPM or bshort format by Mricro or mri_convert and then translated into AFNI BRIK by using 3dcopy or to3d. After doing that, the slices of each brain volume is in proper order, but was not registered or matched well to 3D MPRAGE anatomical structure with AFNI GUI viewing, particularly of the length from the inferior to superior of epi brain structure in z direction much shorter than that of 3D anatomical structure. Thus, I try to use to3d converting the dicom to AFNI format directly. Anyway,I do not know how to solve this problem. I hope you to help me fix it or give me some advices or any suggestion. Thanks in advance.

-haibo
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Subject Author Posted

Running Suma command line utils on system without libXm

Oori March 09, 2006 11:02AM

Re: Running Suma command line utils on system without libXm

rick reynolds March 09, 2006 01:50PM

Re: Running Suma command line utils on system without libXm

Oori March 10, 2006 11:31PM

Siemens Vision Dicom Convert to AFNI Format

Haibo Xu March 11, 2006 11:30AM

Re: Siemens Vision Dicom Convert to AFNI Format

rick reynolds March 11, 2006 05:02PM

Re: Siemens Vision Dicom Convert to AFNI Format

Haibo Xu March 12, 2006 01:37AM

Re: Siemens Vision Dicom Convert to AFNI Format

rick reynolds March 12, 2006 12:35PM

Re: Siemens Vision Dicom Convert to AFNI Format

Haibo Xu March 12, 2006 09:24PM

Re: Siemens Vision Dicom Convert to AFNI Format

rick reynolds March 13, 2006 03:32PM

Re: Siemens Vision Dicom Convert to AFNI Format

Haibo Xu March 14, 2006 03:43AM