AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 19, 2006 01:52PM
Hi Adam,

I looked into case 2, and the time direction in the 1D file
needs to be across columns. That is to say, your Subj_ROIave.1D
file should be one row, not one column (each row represents one
node or voxel).

So change your command:

3dmaskave -mask Subj_ROIs+orig -mrange 1 1 -quiet Subj allruns+orig > Subj_ROIave.1D

to:

echo `3dmaskave -mask Subj_ROIs+orig -mrange 1 1 -quiet Subj allruns+orig` > Subj_ROIave.1D

That will put it on one line.

- rick

Subject Author Posted

detrending and ROIs

Adam Greenberg May 19, 2006 08:52AM

Re: detrending and ROIs

rick reynolds May 19, 2006 09:09AM

Re: detrending and ROIs

Adam Greenberg May 19, 2006 01:31PM

Re: detrending and ROIs

rick reynolds May 19, 2006 01:52PM

Re: detrending and ROIs

Adam Greenberg May 19, 2006 03:59PM

Re: detrending and ROIs

rick reynolds May 19, 2006 04:05PM

Re: detrending and ROIs

Adam Greenberg May 19, 2006 04:41PM

Re: detrending and ROIs

Ziad Saad May 19, 2006 04:55PM

Re: detrending and ROIs

Daniel Glen May 19, 2006 08:46PM