afni.nimh.nih.gov

Hi Adam,

I looked into case 2, and the time direction in the 1D file
needs to be across columns. That is to say, your Subj_ROIave.1D
file should be one row, not one column (each row represents one
node or voxel).

So change your command:

3dmaskave -mask Subj_ROIs+orig -mrange 1 1 -quiet Subj allruns+orig > Subj_ROIave.1D

to:

echo `3dmaskave -mask Subj_ROIs+orig -mrange 1 1 -quiet Subj allruns+orig` > Subj_ROIave.1D

That will put it on one line.

- rick