AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
September 21, 2007 03:01PM
Hi Bonnie,

If your purpose is to use the output file in 3dDeconvolve,
then I think the solution is to not use waver. 3dDeconvolve
can apply the GAM response model internall, and you can view
the ideal curve in the output xmat.x1D file. So it might be
easiest just to use stimulus times, in seconds, instead.

So, supposing that stim_1sec.1D is your 1 second TR stimulus
file, and supposing that it is 4 runs of 128 TRs (1 second,
each), then create 'times.1D' via:

make_stim_times.py -files stim_1sec.1D -nruns 4 -nt 128 \
-prefix times

Note that 3dDeconvolve does not needs stimluli to be TR-locked.
If you have a TR of 2.0, and stimuli at time 4.0, 17.0, 29.34,
that is okay.

How does that seem?

- rick

Subject Author Posted

Waver option

Bonnie September 21, 2007 01:59PM

Re: Waver option

rick reynolds September 21, 2007 03:01PM

Re: Waver option

Bonnie September 21, 2007 04:08PM

Re: Waver option

rick reynolds September 21, 2007 04:39PM

Re: Waver option

Bonnie September 21, 2007 04:56PM

Re: Waver option

rick reynolds September 21, 2007 06:32PM

Re: Waver option

Bonnie September 21, 2007 07:56PM

Re: Waver option

rick reynolds September 21, 2007 09:31PM