AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 07, 2008 01:25PM
Dear Rick,

Thank you very much for your answers! Here is an example of one stim_times file of one regressor (neutral pictures) which I created with make_stim_times.py using -tr 1.0:
65.0 66.0 69.0 70.0 86.0 87.0 102.0 103.0 106.0 107.0 109.0 110.0 113.0 114.0 117.0 118.0 124.0 125.0 127.0 128.0 197.0 198.0 204.0 205.0 208.0 209.0 211.0 212.0 223.0 224.0 226.0 227.0 229.0 230.0 232.0 233.0 243.0 244.0
331.0 332.0 334.0 335.0 365.0 366.0 372.0 373.0 376.0 377.0 423.0 424.0 432.0 433.0 478.0 479.0 492.0 493.0 503.0 504.0 547.0 548.0 550.0 551.0 559.0 560.0

In the second run the first neutral picture is presented 331 seconds after the second run started. So this seems right. Is it that what you meant by "...make sure the first and last couple of stimulus times are correct for each run." ?. As my runs are autoconcatenated by 3dDeconvolve I´m wondering now whether the seconds of the second run have to be added to the first run. So, if my first run is 600 seconds,is the correct time point of the second run not 331 but 600+331? Is it that what you meant with your first answer (1.)? Now I don´t know whether I can use this file or whether I have to use one long file (1200 lines) as input for make_stim_times.py. Something I cleary misunderstood.
I´m sorry to bother you again, but I would be really grateful, if you could help me a second time.

Best regards,
Beate
Subject Author Posted

3dDeconvolve

Beate February 06, 2008 04:58AM

Re: 3dDeconvolve

rick reynolds February 07, 2008 10:36AM

Re: 3dDeconvolve

Beate February 07, 2008 01:25PM

Re: 3dDeconvolve

rick reynolds February 07, 2008 02:18PM

Re: 3dDeconvolve

Beate February 08, 2008 03:39AM

Re: 3dDeconvolve

rick reynolds February 08, 2008 09:23AM

Re: 3dDeconvolve

Beate February 08, 2008 11:03AM