AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 30, 2008 02:25PM
Hi Rick,

We had the same issue, and used your 3dfractionize method,
and that appeared to work fine for us too. Thanks !
Why does the 3dfractionize help message say (under -preserve flag)
** Combining this with the -warp option does NOT
make a general +tlrc to +orig transformer!
This is because for any value to survive the
vote, its fraction in the output voxel must be
>= clip fraction, regardless of other values
present in the output voxel.

Actually, a general +tlrc to +orig transform is exactly what we are
looking for. I understand there will always be interpolation issues
in regridding, and that is what I thought the -clip was about.
I just want to be sure that when I call 3dfractionize
with -warp it is really implementing an inverse of the orig->tlrc warp,
and not just resampling to the -template gridsize.

thanks
Kate
Subject Author Posted

MNI Atlas tools

Anastasia Ford September 11, 2008 12:30PM

Re: MNI Atlas tools

rick reynolds September 11, 2008 02:10PM

Re: MNI Atlas tools

Anastasia Ford September 12, 2008 12:31PM

Re: MNI Atlas tools

rick reynolds September 12, 2008 01:10PM

Re: MNI Atlas tools

Anastasia Ford September 12, 2008 02:19PM

Re: MNI Atlas tools

rick reynolds September 12, 2008 02:47PM

Re: MNI Atlas tools

Anastasia Ford September 12, 2008 03:12PM

Re: MNI Atlas tools

rick reynolds September 12, 2008 04:21PM

Re: MNI Atlas tools

Anastasia Ford September 15, 2008 12:33PM

Re: MNI Atlas tools

Anastasia Ford September 15, 2008 01:19PM

Re: MNI Atlas tools

rick reynolds September 15, 2008 03:08PM

Re: MNI Atlas tools

Anastasia Ford September 16, 2008 12:40PM

Re: MNI Atlas tools

rick reynolds September 16, 2008 12:57PM

Re: MNI Atlas tools

Anastasia Ford September 18, 2008 12:11PM

Re: MNI Atlas tools

Kate Fissell October 30, 2008 02:25PM

Re: MNI Atlas tools

rick reynolds October 30, 2008 04:06PM

Re: MNI Atlas tools

Daniel Glen October 30, 2008 05:10PM

Re: MNI Atlas tools

Brent July 10, 2009 10:48AM

Re: MNI Atlas tools

Brent July 10, 2009 11:26AM

Re: MNI Atlas tools

Daniel Glen July 10, 2009 12:11PM

Re: MNI Atlas tools

Brent July 10, 2009 02:33PM