History of AFNI updates  

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November 04, 2008 11:12AM
Hi Woogul,

If I'm interpretting the images correctly, the first one
looks like an ANOVA or t-test was done on the beta weights,
including a difference (in both directions) between 2 main
regressors, and the corresponding standard deviation.

If you want to run 3dANOVA2 or 3dANOVA3, see the -help output,
including the examples at the end.
e.g. 3dANOVA3 -help

More detailed information can be found in our class handouts,
under Documentation -> class handouts

1. "Soup to Nuts", single subject through group analysis, at
[afni.nimh.nih.gov]

2. Group Analysis overview, at
[afni.nimh.nih.gov]


The 3dANOVA manual can be found under Documentation -> reference
manuals -> ANOVA, at
[afni.nimh.nih.gov]

----

You second image look like scatter plots, where there is a
single beta weight for each subject, plotted against the
motivation scores.

Each subject's beta weight is probably a mean value of the
ROI (which might be defined by the voxels surviving a threshold).
That can be computed by using 3dcalc to create a mask based on
the threshold of some group analysis t-stat (or other), and then
using 3dmaskave or 3dROIstats to get the mean of a beta weight
volume over the mask.

See "3dmaskave -help" or "3dROIstats -help" for examples of how
to run them (examples are at the top, in those cases).

- rick

Subject Author Posted

Functional ROI

Woogul Lee November 03, 2008 11:54AM

Re: Functional ROI

rick reynolds November 03, 2008 01:50PM

Re: Functional ROI

Woogul Lee November 03, 2008 02:48PM

Re: Functional ROI

Woogul Lee November 03, 2008 02:49PM

Re: Functional ROI

rick reynolds November 04, 2008 11:12AM

Re: Functional ROI

Woogul Lee November 05, 2008 11:17AM