AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Andrew Jahn
February 12, 2009 09:36AM
Here is the output for both the anatomical and one of the functional runs:


header file 'cleananat.nii', num_fields = 63, fields:

all fields:
name offset nvals values
------------------- ------ ----- ------
ndim 0 1 3
nx 4 1 512
ny 8 1 512
nz 12 1 160
nt 16 1 1
nu 20 1 1
nv 24 1 1
nw 28 1 1
dim 32 8 3 512 512 160 1 1 1 1
nvox 64 1 41943040
nbyper 72 1 2
datatype 76 1 4
dx 80 1 0.429688
dy 84 1 0.429688
dz 88 1 1.0
dt 92 1 0.0
du 96 1 0.0
dv 100 1 0.0
dw 104 1 0.0
pixdim 108 8 0.0 0.429688 0.429688 1.0 0.0 0.0 0.0 0.0
scl_slope 140 1 5.536752
scl_inter 144 1 0.0
cal_min 148 1 0.0
cal_max 152 1 0.0
qform_code 156 1 1
sform_code 160 1 0
freq_dim 164 1 0
phase_dim 168 1 0
slice_dim 172 1 0
slice_code 176 1 0
slice_start 180 1 0
slice_end 184 1 159
slice_duration 188 1 0.0
quatern_b 192 1 0.5
quatern_c 196 1 -0.5
quatern_d 200 1 -0.5
qoffset_x 204 1 -79.5
qoffset_y 208 1 -123.349518
qoffset_z 212 1 74.199028
qfac 216 1 -1.0
qto_xyz 220 16 0.0 0.0 1.0 -79.5 -0.429688 0.0 -0.0 -123.349518 0.0 0.429688 -0.0 74.199028 0.0 0.0 0.0 1.0
qto_ijk 284 16 -0.0 -2.327273 0.0 -287.067963 0.0 0.0 2.327273 -172.681381 1.0 -0.0 -0.0 79.5 0.0 0.0 0.0 1.0
sto_xyz 348 16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
sto_ijk 412 16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
toffset 476 1 0.0
xyz_units 480 1 2
time_units 484 1 0
nifti_type 488 1 1
intent_code 492 1 0
intent_p1 496 1 0.0
intent_p2 500 1 0.0
intent_p3 504 1 0.0
intent_name 508 16
descrip 524 80
aux_file 604 24
fname 632 1 'cleananat.nii'
iname 640 1 'cleananat.nii'
iname_offset 648 1 352
swapsize 652 1 2
byteorder 656 1 1
data 664 1 (raw data of unknown type)
num_ext 672 1 0
ext_list 680 1 (NULL)

=========================

header file 'cleanrun1.nii', num_fields = 63, fields:

all fields:
name offset nvals values
------------------- ------ ----- ------
ndim 0 1 4
nx 4 1 64
ny 8 1 64
nz 12 1 40
nt 16 1 184
nu 20 1 1
nv 24 1 1
nw 28 1 1
dim 32 8 4 64 64 40 184 1 1 1
nvox 64 1 30146560
nbyper 72 1 2
datatype 76 1 4
dx 80 1 3.4375
dy 84 1 3.4375
dz 88 1 3.94
dt 92 1 2.0
du 96 1 0.0
dv 100 1 0.0
dw 104 1 0.0
pixdim 108 8 0.0 3.4375 3.4375 3.94 2.0 0.0 0.0 0.0
scl_slope 140 1 1.449328
scl_inter 144 1 0.0
cal_min 148 1 0.0
cal_max 152 1 0.0
qform_code 156 1 1
sform_code 160 1 0
freq_dim 164 1 0
phase_dim 168 1 0
slice_dim 172 1 0
slice_code 176 1 0
slice_start 180 1 0
slice_end 184 1 39
slice_duration 188 1 0.0
quatern_b 192 1 0.0
quatern_c 196 1 0.984808
quatern_d 200 1 -0.173648
qoffset_x 204 1 110.0
qoffset_y 208 1 -95.292664
qoffset_z 212 1 -139.551819
qfac 216 1 -1.0
qto_xyz 220 16 -3.4375 0.0 -0.0 110.0 0.0 3.230193 1.347559 -95.292664 -0.0 -1.175694 3.702389 -139.551819 0.0 0.0 0.0 1.0
qto_ijk 284 16 -0.290909 -0.0 -0.0 32.0 0.0 0.273365 -0.099497 12.164735 -0.0 0.086807 0.238501 41.555283 0.0 0.0 0.0 1.0
sto_xyz 348 16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
sto_ijk 412 16 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
toffset 476 1 0.0
xyz_units 480 1 2
time_units 484 1 8
nifti_type 488 1 1
intent_code 492 1 0
intent_p1 496 1 0.0
intent_p2 500 1 0.0
intent_p3 504 1 0.0
intent_name 508 16
descrip 524 80
aux_file 604 24
fname 632 1 'cleanrun1.nii'
iname 640 1 'cleanrun1.nii'
iname_offset 648 1 352
swapsize 652 1 2
byteorder 656 1 1
data 664 1 (raw data of unknown type)
num_ext 672 1 0
ext_list 680 1 (NULL)
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Subject Author Posted

Adwarp Issues

Andrew Jahn February 10, 2009 05:01PM

Re: Adwarp Issues

rick reynolds February 10, 2009 05:09PM

Re: Adwarp Issues

Andrew Jahn February 11, 2009 07:58AM

Re: Adwarp Issues

rick reynolds February 11, 2009 09:47AM

Re: Adwarp Issues

Andrew Jahn February 12, 2009 09:11AM

Re: Adwarp Issues

rick reynolds February 12, 2009 09:19AM

Re: Adwarp Issues

rick reynolds February 12, 2009 09:20AM

Re: Adwarp Issues

Andrew Jahn February 12, 2009 09:36AM

Re: Adwarp Issues

rick reynolds February 13, 2009 09:30AM

Re: Adwarp Issues

Andrew Jahn February 13, 2009 10:23AM

Re: Adwarp Issues

rick reynolds February 13, 2009 06:27PM

Re: Adwarp Issues

Andrew Jahn February 16, 2009 01:51PM

Re: Adwarp Issues

rick reynolds February 17, 2009 09:56AM

Re: Adwarp Issues

Andrew Jahn March 05, 2009 04:51PM