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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Andrew Jahn
June 06, 2009 06:02PM
Hi Rick,

For the run_len, I had to increase it to 2086 (2TR*7Trials*149TRs per run); here was my command and output:

timing_tool.py -multi_timing *.1D -run_len 2086 -multi_stim_dur 2 -multi_show_isi_stats
** MTiming nrows differ for extending (19, 20)
** MTiming nrows differ for extending (19, 25)
** MTiming nrows differ for extending (19, 23)
** MTiming nrows differ for extending (19, 22)
** MTiming nrows differ for extending (19, 17)
** MTiming nrows differ for extending (19, 21)
** MTiming nrows differ for extending (19, 14)
** MTiming nrows differ for extending (19, 12)
** MTiming nrows differ for extending (19, 17)
** MTiming nrows differ for extending (19, 12)
** MTiming nrows differ for extending (19, 16)
** MTiming nrows differ for extending (19, 22)
** MTiming nrows differ for extending (19, 12)

ISI statistics (14 elements) :

total per run
------ ------------------------------
total time 39634.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0 2086.0
total time: stim 38.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0
total time: rest 39596.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0 2084.0

rest: total isi 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
rest: pre stim 17496.0 132.0 180.0 318.0 386.0 480.0 530.0 558.0 596.0 756.0 894.0 978.0 1104.0 1226.0 1320.0 1348.0 1490.0 1586.0 1648.0 1966.0
rest: post stim 22100.0 1952.0 1904.0 1766.0 1698.0 1604.0 1554.0 1526.0 1488.0 1328.0 1190.0 1106.0 980.0 858.0 764.0 736.0 594.0 498.0 436.0 118.0

num stimuli 19 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1


min mean max stdev
------- ------- ------- -------
rest: pre-stim 132.000 920.842 1966.000 542.217
rest: post-stim 118.000 1163.158 1952.000 542.217

rest: run #0 ISI 0.000 0.000 0.000 0.000
rest: run #1 ISI 0.000 0.000 0.000 0.000
rest: run #2 ISI 0.000 0.000 0.000 0.000
rest: run #3 ISI 0.000 0.000 0.000 0.000
rest: run #4 ISI 0.000 0.000 0.000 0.000
rest: run #5 ISI 0.000 0.000 0.000 0.000
rest: run #6 ISI 0.000 0.000 0.000 0.000
rest: run #7 ISI 0.000 0.000 0.000 0.000
rest: run #8 ISI 0.000 0.000 0.000 0.000
rest: run #9 ISI 0.000 0.000 0.000 0.000
rest: run #10 ISI 0.000 0.000 0.000 0.000
rest: run #11 ISI 0.000 0.000 0.000 0.000
rest: run #12 ISI 0.000 0.000 0.000 0.000
rest: run #13 ISI 0.000 0.000 0.000 0.000
rest: run #14 ISI 0.000 0.000 0.000 0.000
rest: run #15 ISI 0.000 0.000 0.000 0.000
rest: run #16 ISI 0.000 0.000 0.000 0.000
rest: run #17 ISI 0.000 0.000 0.000 0.000
rest: run #18 ISI 0.000 0.000 0.000 0.000

all runs: ISI 0.000 0.000 0.000 0.000
all runs: stimuli 2.000 2.000 2.000 0.000


I do not have the python libraries, and was unable to install them with fink; I will upload them presently.

Thanks again,

-Andrew
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Subject Author Posted

Output of 1d_tool.py

Andrew Jahn June 05, 2009 04:40PM

Re: Output of 1d_tool.py

rick reynolds June 05, 2009 05:43PM

Re: Output of 1d_tool.py

Andrew Jahn June 06, 2009 06:02PM

Re: Output of 1d_tool.py

rick reynolds June 08, 2009 10:49AM

Re: Output of 1d_tool.py

Andrew Jahn June 11, 2009 09:58AM

Re: Output of 1d_tool.py

rick reynolds June 11, 2009 01:20PM

Re: Output of 1d_tool.py

Daniel Glen June 11, 2009 02:17PM

Re: Output of 1d_tool.py

Andrew Jahn June 11, 2009 03:25PM

Re: Output of 1d_tool.py

Daniel Glen June 11, 2009 03:30PM

Re: Output of 1d_tool.py

Andrew Jahn June 11, 2009 04:02PM