AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 08, 2009 10:49AM
Hi Andrew,

There was something wrong with your .tgz file, though I was able
to extract the X-matrix from it.

By the way, the timing_tool.py program is currently setup to deal
with local times, only. But your times are global. Note that 298
seconds is your run time (a single run).

In any case, I think the early assessment was correct, in that some
subset of your regressors is not linearly independent. With 481
regressors in your model, which uses AM deconvolution, it isn't a
bit surprise.

I must say, using AM (or AM2) with TENT functions seems dangerous.
That gives you a lot of regressors per stimulus class, and this
sort of problem is common under such conditions. Even if you did
not run into multi-collinearity, the results would have to be
extremely noisy and unreliable. Small effects from noise can have
a large effect on the results.

Do you need to do deconvolution here? Is there any chance that a
fixed-shape response might be appropriate?

- rick

Subject Author Posted

Output of 1d_tool.py

Andrew Jahn June 05, 2009 04:40PM

Re: Output of 1d_tool.py

rick reynolds June 05, 2009 05:43PM

Re: Output of 1d_tool.py

Andrew Jahn June 06, 2009 06:02PM

Re: Output of 1d_tool.py

rick reynolds June 08, 2009 10:49AM

Re: Output of 1d_tool.py

Andrew Jahn June 11, 2009 09:58AM

Re: Output of 1d_tool.py

rick reynolds June 11, 2009 01:20PM

Re: Output of 1d_tool.py

Daniel Glen June 11, 2009 02:17PM

Re: Output of 1d_tool.py

Andrew Jahn June 11, 2009 03:25PM

Re: Output of 1d_tool.py

Daniel Glen June 11, 2009 03:30PM

Re: Output of 1d_tool.py

Andrew Jahn June 11, 2009 04:02PM