We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Yes, MRIcro is only used to convert to Analyze format. I used 3dAFNItoANALYZE and still have the same issue. Changing the orientation also does not fix the problem.
Unfortunately our version of Amira does not read/write Nifti, however the newest version does so we may need to consider upgrading.