AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 10, 2009 04:05PM
Dear AFNI Experts:

Have been reading through the to3d posts and am still having trouble converting a set of .ima files into a 4D brik file.
I have 338 ima files corresponding to 338 TRs. (all data is separated into directories such that ALL ima files within a directory belong to the same run of data; eg. 338 ima files in each directory)

1. first attempt
to3d -epan -prefix 1001run1 *ima
yields a dataset that contains 1 subbrik with 64X64X11492 dimensions.

2. second attempt
the to3d help says to use the following option to specify that inputs are 3D datafiles:
3Dd:hglobal:himage:nx:ny:nz:fname [double input]

so i tried
to3d -epan 3Dd:hglobal:himage:64:64:33:*ima
but it doesn't like this -- FATAL ERROR: NO INPUT IMAGE FILES?

3. also saw a post on using 3dcopy to convert each ima file to BRIK individually and then could presumably use a 3dbucket but previous experience suggests this entirely cumbersome way not necessary . . .

thanks for help,

dharol
Subject Author Posted

converting 3D .ima files to 4D brik file

dharol November 10, 2009 04:05PM

Re: converting 3D .ima files to 4D brik file

Daniel Glen November 10, 2009 04:52PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 25, 2010 02:39PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 25, 2010 04:55PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 10:29AM

Re: converting 3D .ima files to 4D brik file

Daniel Glen March 26, 2010 12:30PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 04:15PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 26, 2010 04:20PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 04:42PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 26, 2010 04:54PM