AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
Daniel Glen
November 10, 2009 04:52PM
You can use Dimon to create a short script that calls to3d. For Siemens mosaic data, provide Dimon with the number of slices in a volume (33 slices per volume in this example) and the file pattern.

Dimon -GERT_RECO -gert_filename save_EPI -dicom_org -quit -gert_nz 33 -gert_to3d_prefix EPI -infile_pattern "functional/*.IMA"
./save_EPI

When specifying file patterns for Dimon or to3d, you will need to enclose the pattern in quotes to prevent the shell from expanding them.
Subject Author Posted

converting 3D .ima files to 4D brik file

dharol November 10, 2009 04:05PM

Re: converting 3D .ima files to 4D brik file

Daniel Glen November 10, 2009 04:52PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 25, 2010 02:39PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 25, 2010 04:55PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 10:29AM

Re: converting 3D .ima files to 4D brik file

Daniel Glen March 26, 2010 12:30PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 04:15PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 26, 2010 04:20PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 04:42PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 26, 2010 04:54PM