AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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March 25, 2010 02:39PM
Hi,

I also have a series of Siemens mosaic data I am trying to convert into a 4D dataset, but I am running into the following error:

scnlab% Dimon -GERT_RECO -gert_filename save_EPI -dicom_org -quit -gert_nz 32 -gert_to3d_prefix EPI -infile_pattern "*.IMA"

Dimon running, use <ctrl-c> to quit...

-- scanning for first volume
-- checking 160 potential DICOM files... 00%** failed to read file 'WAC2006-007*.17518304.IMA' as dicom
** failed to read file

...

++ found 0 DICOM files
** found no DICOM files to process


------

I've also tried using 3dcopy to recombine them using 3dbucket, but I am running into a dead end there as well:

scnlab% foreach file ( * )
foreach? 3dcopy $file {$file}_AFNI
foreach? end
++ 3dcopy: AFNI version=AFNI_2009_12_31_1431 (Jan 26 2010) [32-bit]
*+ WARNING: missing view dataset: WAC2006-007.*.IMA+orig - SKIPPING
** ERROR: no datasets found!

etc.


Any insights as to what I may be doing wrong here? We usually export in DICOM format, but for this particular study we only transferred the IMA files; I would like to learn how to convert them before asking the scan center to export everything again.


Many thanks in advance,

-Andrew
Subject Author Posted

converting 3D .ima files to 4D brik file

dharol November 10, 2009 04:05PM

Re: converting 3D .ima files to 4D brik file

Daniel Glen November 10, 2009 04:52PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 25, 2010 02:39PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 25, 2010 04:55PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 10:29AM

Re: converting 3D .ima files to 4D brik file

Daniel Glen March 26, 2010 12:30PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 04:15PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 26, 2010 04:20PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 04:42PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 26, 2010 04:54PM