AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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Daniel Glen
March 26, 2010 12:30PM
AFNI doesn't deal with the gzipped files. The IMA files are DICOM files, so that is usually not a problem, unless they are corrupted or not written by Siemens correctly. gunzip all the files first and try again. Unfortunately if it still can't be read by to3d or Dimon, you won't be able to read the mosaic files with the raw format specifier except by cutting up the mosaic into single slices using imcutup as in this very old message posting. (You can also try reading the files with another conversion program like mri_convert in the FreeSurfer package, mriconvert, medcon, MRICRO)

[afni.nimh.nih.gov]
[afni.nimh.nih.gov]
Subject Author Posted

converting 3D .ima files to 4D brik file

dharol November 10, 2009 04:05PM

Re: converting 3D .ima files to 4D brik file

Daniel Glen November 10, 2009 04:52PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 25, 2010 02:39PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 25, 2010 04:55PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 10:29AM

Re: converting 3D .ima files to 4D brik file

Daniel Glen March 26, 2010 12:30PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 04:15PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 26, 2010 04:20PM

Re: converting 3D .ima files to 4D brik file

Andrew Jahn March 26, 2010 04:42PM

Re: converting 3D .ima files to 4D brik file

rick reynolds March 26, 2010 04:54PM